Dear Colleagues I have come across a mouse gene in the browser that's a bit confusing. I used the knownGene list for annotation in an RNA-seq analysis and saw differential expression in uc009fcc.1. I used bigBams to load the reads into the browser for further examination and went to the uc009fcc locus on chr7. uc009fcc does not show up but AF365932 does. AF365932 is indeed the cross-ref value in kgXref. But uc099fcc is listed with 7 exons and AF365932 appears to have only one according to its Genbank record and the way it's rendered. The Refseq and Ensembl genes at that locus look like they are much better matches. Is there a control I have missed that would show uc009fcc?
Thanks Mike Michael Muratet, Ph.D. Senior Scientist HudsonAlpha Institute for Biotechnology [email protected] (256) 327-0473 (p) (256) 327-0966 (f) Room 4005 601 Genome Way Huntsville, Alabama 35806 _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
