Hello Malik, The display conventions are described on the description page for this track:
A gray box encompasses the peaks of transcription factor occupancy. The darkness of the box is proportional to the maximum signal strength observed in any cell line. The name to the left of the box is the transcription factor. The letters to the right represent the cell lines where a signal is detected. The darkness of the letter is proportional to the signal strength in the cell line. Click on an item in the track to see the cell lines spelled out. To get to the description page you can click on the blue/gray bar to the left of the track in the main display or on the track title above the pulldown menu for the track. Hopefully this information was helpful and answers your question. If you have further questions or require clarification feel free to contact the mailing list at [email protected]. Regards, Pauline Fujita UCSC Genome Bioinformatics Group http://genome.ucsc.edu On 10/20/10 11:18, Keshwani, Malik wrote: > Hey Vanessa > > I was able to get few transcription factors for my protein on interest > > http://genome.ucsc.edu/cgi-bin/hgTracks?position=chr19:14064927-14079225&hgsid=171489536&wgEncodeRegTfbsClustered=pack > > There are 6 in total but I dont know what the shading color of grey next to > them means and also the alphabet next to it means > Can you help by checking the link above > they are ctcf, rad21, zbtb33, ebf, ini1 and baf155 > > regards > Malik Keshwani > Research Associate, HHMI > University of California, San Diego. > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
