Hi, I got the following errors when installing BLAT on linux. : yong...@silver blatSrc; make cd lib && make make[1]: Entering directory `/net/zz/bi/u9/yxl101820/Downloads/SoftWares/blatSrc/lib' ar rcus x86_64/jkweb.a aliType.o apacheLog.o asParse.o axt.o axtAffine.o base64.o bits.o binRange.o blastOut.o blastParse.o boxClump.o boxLump.o browserGfx.o cda.o chain.o chainBlock.o chainConnect.o chainToAxt.o chainToPsl.o cheapcgi.o codebias.o colHash.o common.o correlate.o dgRange.o diGraph.o dlist.o dnaLoad.o dnaMarkov.o dnaseq.o dnautil.o dnaMotif.o dtdParse.o dystring.o emblParse.o errabort.o errCatch.o fa.o ffAli.o ffScore.o filePath.o fixColor.o flydna.o fof.o fuzzyShow.o gapCalc.o gdf.o gemfont.o gfNet.o gff.o gfxPoly.o gifcomp.o gifdecomp.o gifLabel.o gifread.o gifwrite.o hash.o histogram.o hmmPfamParse.o hmmstats.o htmlPage.o htmshell.o internet.o intExp.o jointalign.o jpegSize.o keys.o kxTok.o linefile.o localmem.o log.o maf.o mafFromAxt.o mafScore.o md5.o mgTinyFont.o mgSmallFont.o mgMediumFont.o mgLargeFont.o mgHugeFont.o memalloc.o memgfx.o mgCircle.o mgPolygon.o mime.o net.o nib.o nibTwo.o nt4.o obscure.o oldGff.o oligoTm.o options.o osunix.o pairHmm.o phyloTree.o pipeline.o portimpl.o pscmGfx.o psGfx.o psl.o pslGenoShow.o pslShow.o pslTbl.o pslTransMap.o psPoly.o pthreadWrap.o qa.o quickHeap.o quotedP.o ra.o rangeTree.o rbTree.o repMask.o rle.o rnautil.o rudp.o scoreWindow.o seqOut.o seqStats.o servBrcMcw.o servcis.o servCrunx.o servcl.o servmsII.o servpws.o shaRes.o slog.o snof.o snofmake.o snofsig.o spacedColumn.o spacedSeed.o spaceSaver.o sqlNum.o sqlList.o subText.o synQueue.o tabRow.o textOut.o tokenizer.o trix.o twoBit.o verbose.o vGfx.o vGif.o wildcmp.o wormdna.o xa.o xAli.o xap.o xenshow.o xmlEscape.o xp.o make[1]: Leaving directory `/net/zz/bi/u9/yxl101820/Downloads/SoftWares/blatSrc/lib' cd jkOwnLib && make make[1]: Entering directory `/net/zz/bi/u9/yxl101820/Downloads/SoftWares/blatSrc/jkOwnLib' gcc -O -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DJK_WARN -Wall -Werror -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o bandExt.o -c bandExt.c gcc -O -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DJK_WARN -Wall -Werror -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o crudeali.o -c crudeali.c gcc -O -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DJK_WARN -Wall -Werror -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o ffAliHelp.o -c ffAliHelp.c gcc -O -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DJK_WARN -Wall -Werror -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o ffSeedExtend.o -c ffSeedExtend.c gcc -O -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DJK_WARN -Wall -Werror -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o fuzzyFind.o -c fuzzyFind.c cc1: warnings being treated as errors fuzzyFind.c: In function ‘lumpHits’: fuzzyFind.c:1049: error: ‘proto.score’ may be used uninitialized in this function make[1]: *** [fuzzyFind.o] Error 1 make[1]: Leaving directory `/net/zz/bi/u9/yxl101820/Downloads/SoftWares/blatSrc/jkOwnLib' make: *** [all] Error 2
_______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
