Hi,
I've been working to install genome browser and decided to reach out to you
guys for help. I've tried several install protocols (that I found on the mail
lists but for older version of Mac OS X) and I always get after the final make
in the directory jksrc the error as follows (same error for make in
jksrc/gfserver or in utils/bedToBigBed):
Undefined symbols:
"_ERR_load_crypto_strings", referenced from:
_netConnectHttps in jkweb.a(https.o)
"_BIO_ctrl", referenced from:
_netConnectHttps in jkweb.a(https.o)
_netConnectHttps in jkweb.a(https.o)
_netConnectHttps in jkweb.a(https.o)
_netConnectHttps in jkweb.a(https.o)
_netConnectHttps in jkweb.a(https.o)
"_BIO_read", referenced from:
_netConnectHttps in jkweb.a(https.o)
"_BIO_free_all", referenced from:
_netConnectHttps in jkweb.a(https.o)
"_BIO_write", referenced from:
_netConnectHttps in jkweb.a(https.o)
"_OPENSSL_add_all_algorithms_noconf", referenced from:
_netConnectHttps in jkweb.a(https.o)
"_ERR_print_errors_fp", referenced from:
_netConnectHttps in jkweb.a(https.o)
_netConnectHttps in jkweb.a(https.o)
_netConnectHttps in jkweb.a(https.o)
_netConnectHttps in jkweb.a(https.o)
ld: symbol(s) not found
collect2: ld returned 1 exit status
make[1]: *** [blat] Error 1
So the best protocol I've had is as follows:
I installed MySQL (5.1.51) and fink (0.29.10) and openssl (1.0.0a). I'm running
Mac OS X 10.6.4 on a Macbook with 2.4 GHz Intel Core 2 Duo.
PATH=$PATH:$HOME/bin/x86_64
MACHTYPE=x86_64
MYSQLLIBS="/usr/local/mysql/include/libmysqlclient.a -lz"
MYSQLINC=/usr/local/mysql/lib
make in lib
make in jkownlib
sudo mkdir /usr/local/apache/
sudo mkdir /usr/local/apache/cgi-bin-jacobschwartz
sudo chown -R jacobschwartz /usr/local/apache/cgi-bin-jacobschwartz
sudo mkdir /usr/local/apache/htdocs/
sudo chown -R jacobschwartz /usr/local/apache/htdocs
make in jksrc
If you have any ideas I would really appreciate it. I can work to install on a
different computer (our Linux cluster) but if possible I hoped to install on a
simple machine for simple tasks like making bedtobigbed conversions.
Thanks so much,
Jacob Schwartz
Postdoctoral researcher
Lab of Tom Cech
Department of Chemistry and Biochemistry
UC Boulder, CO 80309
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