Yes, I got the newest jksrc.zip and it compiled perfect. All the utilities seem to be working too. I declared all of the environment variables and USE_ variables to 1 as you suggested and pointed SAMDIR, PNGLIB, PNGINCL, MYSQLINC, and MYSQLLIBS to the right places. Must have been an old build specific problem. Thanks so much for your time,
Jacob -----Original Message----- From: Hiram Clawson [mailto:[email protected]] Sent: Friday, October 29, 2010 4:20 PM To: Jacob C Schwartz Cc: [email protected] Subject: Re: [Genome] install Mac OS X 10.6.4 w/ correction Good Afternoon Jacob: I see no error in the example you give here. Were you able to get this stuff built and working ? --Hiram Jacob C Schwartz wrote: > ( cd hgGateway && echo hgGateway && make compile) > hgGateway > gcc -O -g -Wall -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DUSE_PNG -DCOLOR32 -DUSE_BAM -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc /usr/local/include/libpng14 -I/Users/jacobschwartz/samtools-0.1.8/ -o hgGateway.o -c hgGateway.c > i686-apple-darwin10-gcc-4.2.1: /usr/local/include/libpng14: linker input file unused because linking not done > gcc hgGateway.o ../../lib/x86_64/jkhgap.a ../../lib/x86_64/jkweb.a -lssl /usr/local/lib/libpng14.a /Users/jacobschwartz/samtools-0.1.8//libbam.a -lm /usr/local/mysql/lib/libmysqlclient.a -lssl -lcrypto -lz > mv a.out hgGateway _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
