Dear Sir/Admins, I have a question and request for your RefSeq (non-coding genes) mapping in hg18, UCSC Browser. I'm working on microRNA topic. The question is about mapping of RefSeq microRNA. Some of RefSeq microRNA seem to be wrongly mapped on hg18. I could give you a few RefSeq wrongly mapped e.g. NR_031679, NR_031644, NR_030317, etc.
NR_031679 (MIR548H3) was mapped at chr1:105130114-105476802 while hsa-mir-548h-3 was mapped at chr17:13387571-13387688 (proved by blat). NR_031644 (MIR548F3) was mapped at chr1:213146072-213334022 while hsa-mir-548f-3 was mapped at chr5:109877429-109877515 (proved by blat). NR_030317 (MIR548A2) was mapped at chr13:78340250-78743319 while hsa-mir-548a-2 was mapped at chr6:135601991-135602087 (proved by blat). Would you like to fix these problem? These make me confuse and wonder how reliable is this mapping of RefSeq non-coding genes. Look forward to hearing from you. Any suggestions will be appreciated. Thank you for your time. Yours sincerely, Piroon -- Mr.Piroon Jenjaroenpun <[email protected]> Genome and Gene Expression Data Analysis Division Bioinformatics Institute Address: 30 Biopolis Street, #07-01 Matrix, Singapore 138671 O o O o O o | O o | | O o | | O o | | | O | | | | O | BII | O | | o O | | o O | | o O | o O o O o O _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
