Hi Jian, It depends on which assembly you are using. If you are using hg18 or 19 there are a few tracks that would probably be what you are looking for.
For the hg19 assembly, on the main browser page (http://genome.ucsc.edu/cgi-bin/hgTracks), look under the track heading "Genes and Gene Prediction Tracks" and note the tracks 'tRNA Genes' and 'sno/miRNA'. These cover some of the RNAs you mentioned. On hg18, there is an additional track under the same heading called 'RNA Genes' which contains all the RNAs you mentioned. Click on the linked track titles (e.g. 'RNA Genes' to see a description of what that track contains.) If you want to see/download a list of these RNA, use the Table Browser (http://genome.ucsc.edu/cgi-bin/hgTables). And so, for example, to view the data from the RNA Genes track from hg18, select clade: Mammal, genome: Human, assembly: hg18, group: Genes and Gene Prediction Tracks, track: RNA Genes, region: Genome, output format: 'all fields' or 'selected fields', and then click get output...or if you want it to output to a file, specify a name in the 'output file' field. Let me know if you have any additional questions, - Greg On 10/31/10 11:04 PM, Yuan Jian wrote: > > > -------- Original Message -------- > Subject: [Genome] rRNA,scRNA,snRNA,snoRNA,tRNA > Date: Sun, 31 Oct 2010 23:04:58 -0700 (PDT) > From: Yuan Jian <[email protected]> > To: [email protected] > > Hi, > is it possible to get the chromosome locations of all > rRNA,scRNA,snRNA,snoRNA,tRNA for human from UCSC table menu? > > thanks > jian > > > > > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
