Hi Joseph, In general, for any of the gene tracks, you can distinguish coding from non-coding genes by using the Table Browser to filter the genesets on the criteria that cdsStart=cdsEnd (in which case, there is no coding sequence for that gene). For our Ensembl Genes tracks, this is what determines whether we list "Ensembl Protein: none (non-coding)" on the details page.
For RefSeq, you can either look for cdsStart=cdsEnd, or you can look at the name of the transcript. Those that start with "NR_" are noncoding: http://www.ncbi.nlm.nih.gov/projects/RefSeq/key.html I hope this is helpful. Please feel free to contact us again at [email protected] if you have further questions. -- Brooke Rhead UCSC Genome Bioinformatics Group joseph wrote on 11/1/10 3:50 PM: > Hello > I found in a previously answered question that one can use the field > 'category' > in the kgTxInfo table to locate coding and noncoding UCSC genes. > > Are there similar connected tables for RefSeq and Ensembl genes to locate > coding > and noncoding genes? > Joseph > Thanks > > > > > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
