Dear Mingyun, We don't support Gbrowse. Please visit the gbrowse site (http://www.gbrowse.org/index.html). To get help you can subscribe to their mailing list located here: https://lists.sourceforge.net/lists/listinfo/gmod-gbrowse
Hope this helps. If you have any questions regarding the UCSC Genome browser, please don't hesitate to contact the mailing list. Vanessa Kirkup Swing UCSC Genome Bioinformatics Group ----- Original Message ----- From: "Mingyun Huang" <[email protected]> To: [email protected] Sent: Thursday, November 4, 2010 8:17:02 AM GMT -08:00 US/Canada Pacific Subject: [Genome] How to show chip-seq images with subtrack option in Gbrowser2.15 Hi, I installed Gbrowser2.15 on my machine and showed chip-seq coverage data on Gbrowser, but when I tried to use subtrack option, the images are not shown (pop up box is created though). What I did is to add several lines in conf file according to "Creating_and_Managing_Subtracks_with_GBrowse2": [ChIP-seq] ... subtrack select = Antibody tag_value antibody ; subtrack table = "WT Leaf 1 H3K27me3"; "WT Leaf 2 H3K27me3"; "WT Leaf 1 H3K27me3" is name in my wig file, the top line of the wig file is: track type=wiggle_0 visibility=full color=255,0,0 altColor=255,0,0 windowingFunction=mean name="WT Leaf 1 H3K27me3" description="" I converted wig file to gff file and created many wib files, then I loaded gff file to database. Please tell me what I should do to show images with subtrack option. Thanks a lot, Maria _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
