Dear Maayan, To get the options that you are looking for you will also need to set "output format: BED - browser extensible data" in the table browser and then click on "get output".
Hope this helps. If you have additional questions, please contact the mailing list. Vanessa Kirkup Swing UCSC Genome Bioinformatics Group ----- Original Message ----- From: "maayan kreitzman" <[email protected]> To: [email protected] Sent: Thursday, November 4, 2010 6:24:54 AM GMT -08:00 US/Canada Pacific Subject: [Genome] table browser: get output Hi there, Several months ago I downloaded some tables that seem to no longer be available. In the table browser, after clicking "get output" (for, say, gene&gene prediction tracks, track: Refseq genes, table: refgene region:genome), there was another page where I could specify what part of the gene I wanted: the whole gene, 5' UTR exons, 3' UTR exons, or upsream or downstream of the genes by some amount. Then the table could be sent to galaxy. So, for example, I was able to get a table with one line per exon only in 3' UTRs of whole genome instead of one line per whole gene. This seems to have disappeared. Has it? thanks for all your work, Maayan _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
