Thank-you for your reply. I've tried this but was not successful. I have the reference position and chromosome position of possible SNPs. When I define the position, the program requests I add a position greater than 1 nucleotide. If I have the reference position of nucleoide changes, how else would I be able to check whether they are known SNPs? It's a long list and I was hoping there is some automated way to do this on UCSC genome browser. Thank-you, Chris
On Mon, Oct 25, 2010 at 4:37 PM, Brooke Rhead <[email protected]> wrote: > Hi Chris, > > You can do this with the Table Browser ( > http://genome.ucsc.edu/cgi-bin/hgTables). Select the assembly you wish to > use, and then the Variation and Repeats group, and the SNP track and table. > For "region" hit the "define regions" button and enter your list of > positions. Choose your output format, and then hit "get output". > > You should see all of the SNPs that lie within the regions you entered. > > -- > Brooke Rhead > UCSC Genome Bioinformatics Group > > > > On 10/23/10 22:47, Chris Dias wrote: > >> Hi, >> >> I'd like to know if with a list of reference positions I can any coincides >> with a know SNP position. >> >> Thank-you >> Chris Dias >> _______________________________________________ >> Genome maillist - [email protected] >> https://lists.soe.ucsc.edu/mailman/listinfo/genome >> > _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
