If your track has too many items in one location, it can't be displayed in anything but dense or squish. Create a wiggle track of the density of the overlaps with the kent program: bedItemOverlapCount in order to get a picture of the pile ups.
---Hiram ----- Original Message ----- From: "Duke" <[email protected]> To: [email protected] Sent: Wednesday, December 1, 2010 10:40:24 AM GMT -08:00 US/Canada Pacific Subject: Re: [Genome] BAM always in "dense" Any one? I currently have few tracks with the same issues (they are in squish, but they look like just dense) on our local mirror. I wonder it is our local mirror, or it is how it happens. Thanks, D. On 11/30/10 5:14 PM, Duke wrote: > Hi all, > > Please correct me if I am wrong. Is the UCSC browser working with the > BAM files as if there are too many data to show, these BAM tracks will > always be in "dense" no matter what type (squish, full) you have chosen > the tracks to be? > > Thanks, > > D. _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
