Hi, I was checking for one protein the blastp value from the gene sorter compared to when I do it manually for the canonical gene ( sequence as given on ucsc) on ncbi and I noticed that for SMAD5 protein and SMAD2 protein the given score on ncbi for their homology is 7e(-153) whereas on the gene sorter e^(-134) or e^(-135) (depending on which is query and which is subject). How can I explain the differences in scores and how can I reproduce the result on ucsc gene sorter? Thanks, Stefanie
--------------------------------------------------- Stefanie Gerstberger graduate student in Chemical Biology Tri-Institutional Program Cornell University, Rockefeller University, Memorial Sloan Kettering Cancer Center _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
