Hi UCSC, I've noticed that some of the UCSC refSeq mappings can be out of date since the refGene track was made because the underlying RefSeq has changed. Examples include NM_001002158 and NM_001002225 on danRer6. If I blat these sequences to danRer6 now, I get slightly different coordinates. It seems that when the Genbank/refseq update process is run, existing RefSeq mappings are not checked or updated. While it would be nice to have that fixed, I don't really mind it all that much and can live with that.
However, for some research I was doing, I need to make an updated refGene track from scratch and was wondering how UCSC did it. I did not find the commands ennumerated in makeDb/doc and was wondering if they are made available in the kent src somewhere. If you can tell me where they can be found or send me a shell script, I'd really appreciate it. Thanks, Saatvik _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
