Good Afternoon: Please go to the source code directory: src/product/ and follow the instructions in README.building.source
You have missed a few of the key steps in this procedure. --Hiram Yao, Jianchao wrote: > Hi, > > > > I was trying to build liftOver from source since the binary you provide > requires GLIBC 2.4, and we have an older Linux kernel with GLIBC > > 2.3.4. I got the source from http://genome.ucsc.edu/admin/git.html, and > did the build according to the README and also > http://genome.ucsc.edu/admin/jk-install.html. > > Then I used "make install" to put the built executables into DESTDIR > ~/bin/hg. It looked like "hgLiftOver was built (not liftOver) but I got > this when I tried to run it: > > > > $ ~/bin/hg/hgLiftOver test_hg19_input.txt hg19ToHg18.over.chain > test_hg18_output.txt unmapped > > $ Couldn't open ~/.hg.conf , No such file or directory > > > > Also, I tried to build liftOver by itself and it doesn't build/link: > > > > Under ~/kent/src/hg/liftOver, I typed "make"... > > > > $ make _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
