Good Morning Anamika: Following the instructions for direct MySQL access: http://genome.ucsc.edu/FAQ/FAQdownloads.html#download29
You can select the genes with single exons from the knownGene table: $ mysql --user=genome --host=genome-mysql.cse.ucsc.edu -A \ -e "select chrom,txStart,txEnd,name from knownGene where exonCount=1;" hg19 You can perform the same selection with the table browser. Use the "filter" to set exonCount is = 1 then "selected fields from primary and related tables" There are 5,212 genes in hg19.knownGene that have single exons. --Hiram Anamika KRISHANPAL wrote: > Hello, > Is it possible to retrieve all the homo sapiens intronless genes (preferably > in bed format) from UCSC? > Thanks. > > Sincerely, > Anamika _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
