Hi Duke, I'm unsure of where you got the information that our most updated version is from 2007 as our mRNA track from GenBank is incrementally updated on a daily basis (see this FAQ for more information: http://genome.ucsc.edu/FAQ/FAQreleases.html#release6). Can you please let me know where you saw this?
Note that the mRNA table contains only the mRNAs that were aligned to the genome using BLAT. The full set of unaligned sequences can be found here: http://hgdownload.cse.ucsc.edu/goldenPath/mm9/bigZips/mrna.fa.gz. Also, it may be of interest to you to know that you can download copies of any of our tables here (http://hgdownload.cse.ucsc.edu/downloads.html), which is faster than downloading it through the table browser. Just click on your organism of interest and then click the "Annotation database" link. This will take you to a folder with text files of all of our tables. I hope this information is helpful. Please feel free to contact the mail list again if you require further assistance. Best, Mary ------------------ Mary Goldman UCSC Bioinformatics Group On 12/15/10 12:50 PM, Duke wrote: > Hi all, > > I am about to work with a mouse mRNA dataset, and I wonder if anybody > knows a good (most updated, complete list) resource of mRNA? I know that > I can use Table Browser to get the mRNA tracks from UCSC, but I think > this one is kind of out-of-date (most updated version is mm9 in 2007). > > Thanks, > > D. > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome > _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
