Hello, I've been having trouble getting UT regions. Before, I was getting UT regions by only using txStart and txEnd as well as cdsStart and cdsEnd. This gave me inaccurate numbers because I wasn't taking into account the fact that the UTR spans two exons. Then I tried using the exonStarts and exonEnds options as well as the coding and transcription ones, from the "selected fields from primary and related tables", but I realize each gene has multiple exons making this task very tedious when working with 1000+ genes at a time. My question being, is there a different approach that would be the quickest way to get the UTRs that would also include the gene symbols?
I have noticed if I use the BED table option, I'm unable to see which genes corresponds to which numbers since gene symbols are not shown. Thank you! Libia _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
