Dear Michael, A colleague of mine suggests trying doing these changes to your mirror:
Change the hgPbOk field of the central DB table dbDb into 0 for all genomes you do not host (completely) on your mirror. This hopefully will allow the Proteome browser to bypass all the genomes that you aren't hosting on your mirror. Hope this helps. If you have further questions, please don't hesitate to contact the mailing list. Vanessa Kirkup Swing UCSC Genome Bioinformatics Group ----- Original Message ----- From: "Michael Molstad" <[email protected]> To: "UCSC GENOME MIRROR HELP" <[email protected]> Sent: Thursday, December 16, 2010 6:27:47 PM Subject: [Genome] proteome browser Hello When trying our proteome browser in our mirror, I got an error rn4 database not present; so I created an rn4 database, retrieved the minimum text dumps using fetchMiniamlGoldenPath.sh and populated the rn4 database using loadDb.sh. Everything worked fine; however, I know get the error Can't start query: select count(distinct spID) from rn4.kgSpAlias where alias='TP53'; mySQL error 1146: Table 'rn4.kgSpAlias' doesn't exist Is there a source that tells me which databases are needed for the proteome browser? Thanks, Michael _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
