Hi Nicolas, We recommend following the steps in this previous mailing list question: https://lists.soe.ucsc.edu/pipermail/genome/2010-December/024414.html, except that when you create an intersection with your gene track of interest, choose "Base-pair-wise intersection" or "All Mulitz records that have any overlap ..." .
I hope this information is helpful. Please feel free to contact the mail list again if you require further assistance. Best, Mary ------------------ Mary Goldman UCSC Bioinformatics Group ----- Original Message ----- From: "Nicholas Price" <[email protected]> To: [email protected] Sent: Tuesday, December 21, 2010 10:32:50 AM Subject: [Genome] Intron-removal Hi I want to find all the primate orthologs to a Human gene and retrieve only the coding region. I use the Human Genome, conservation track, comparative genomics, Multiz-Align. I put the coordinates of my gene..and I retrieve the alignments. I do all this from a perl script..I am wondering how to filter out the intronic regions ..etc and get only the coding region? Is there an option in Tables that does that? Nicholas -- The oppressed become the oppressors Paulo Freire (1921-1997) _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
