Hello Dafil, You can get the transcription and coding region start and end positions from the table browser (http://genome.ucsc.edu/cgi-bin/hgTables). After selecting hg18, select:
group: Genes and Gene Prediction Tracks track: (for this example we'll choose UCSC genes) table: knownGene To determine which gene prediction track best fits your needs you can read the details of each track on its description page. The description pages can be accessed by clicking on the blue/gray bar to the left of the track in the main display or by clicking on the title of the track above its pulldown menu. To get coordinates across the whole genome make sure you have region: genome selected. Then choose: output format: selected fields from primary and related tables This will take you to a menu where you can select which fields (i.e. gene name, coordinates, etc) you want to include in the output. Hopefully this information was helpful and answers your question. If you have further questions or require clarification feel free to contact the mailing list at [email protected]. Best regards, Pauline Fujita UCSC Genome Bioinformatics Group http://genome.ucsc.edu On 12/14/10 10:54 AM, [email protected] wrote: > Hi, I am looking for the coordinates for (hg18) the gene reference gene > promoter > region and stop codon coordinates for the whole genome. How can i get to > download this information. > > thanks > -dafil > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome > _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
