Hi Will, Please check that all your track line attributes are one line only and that there are no hidden carriage returns. If this does not resolve your problem, could you please send the real link to your BAM file just to me? This way I will be able to test if I am able to load it from here.
I hope this information is helpful. Please feel free to contact the mail list again if you require further assistance. Best, Mary ------------------ Mary Goldman UCSC Bioinformatics Group ----- Original Message ----- From: "William Yarosh" <[email protected]> To: [email protected] Sent: Tuesday, December 21, 2010 1:31:32 PM Subject: [Genome] Custom Tracks Question - BAM Hi, I'm trying to upload a custom track using a .BAM &.BAM.BAI files generated by the CASAVA program (illumina). I am hosting the files on a server and tried inputting the commands track type=bam name="BAM Example One" description="Please Work" pairEndsByName=. pairSearchRange=500 chromosomes=chr2L bamColorMode=gray maxWindowToDraw=200000 db=dm3 visibility=pack bigDataUrl= ftp://spradlinglab:[email protected]/Will/sorted2LH.bam and track type=bam bigDataUrl= ftp://spradlinglab:[email protected]/Will/sorted2LH.bam I'm getting an error that says Expecting 'track' line, got ‹ line 1 of ftp://spradlinglab:[email protected]/Will/sorted2LH.bam I didn't see anything about this sort of error in the FAQ & was wondering if you knew what the problem might be. Thanks! Will Yarosh _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
