Hello, I am a first year graduate student, and I am having difficulty addressing a problem in my lab that I was hoping I could use the genome browser to answer. I have a list of ~600 genes and I would like to do a methylation array study to see which genes get methylated under certain conditions. However, I want to narrow down this list by choosing only those genes that have the ability to be methylated (I do not know if every gene can be methylated, and I was hoping to choose just those genes with CpG islands).
I received a recommendation to use methyl-seq and Infinium 27K array data on the hg18 freeze on UCSC browser but I cannot seem to find these options in the browser. Could you point me in the right direction? Also, I was wondering if there is a less tedious method than typing in the 600 genes one by one to search for CpG islands. Any insight would be very much appreciated. Thank you for your help! Jessilyn _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
