Dear Vanessa, Thank you for the mail.
I have another question about the peak table. In the peak table, the position of the highest peak in a region is annotated. Also we know that a TF might have many binding sites within the promoter region of a gene if it regulates the gene. Can I have any correlation between the the position of a highest peak and the TFBSs of the corresponding TFs? Sincerely yours, Amy ----- Original mail ---- Dear Amy, If you are just looking for the positions you will want to use the peaks table: wgEncodeYaleChIPseqPeaksK562bYy1 and select the appropriate fields of interest using the table browser. To answer your questions: The signal value (in the peaks table) is calculated using the data value (from the signal table). To find out about the statistical significance of the additional fields, please see the description page: http://genome.ucsc.edu/cgi-bin/hgTrackUi?c=chrX&g=wgEncodeYaleChIPseq and within this page there is a links to more detail information: http://genome.ucsc.edu/goldenPath/help/qValue.html If you have further questions, please contact the mailing list. Vanessa Kirkup Swing UCSC Genome Bioinformatics Group _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
