Hi Dechao Bu, If you are looking for the positions on the genomic sequence where the RefSeq mRNAs aligned, you can use the 'refGene' table. In the Table Browser (http://genome.ucsc.edu/cgi-bin/hgTables) this can be found by selecting either mouse or human, and then
group: Genes and Gene Prdiction Tracks track: RefSeq Genes table: refGene Alternatively, you can download a text version of the entire table from our downloads server (http://hgdownload.cse.ucsc.edu/) by selecting mouse or human, then clicking "Annotation database", then finding the file "refGene.txt.gz". If you are instead looking for more information about the alignments themselves, you can get alignment data in PSL format (http://genome.ucsc.edu/FAQ/FAQformat.html#format2) by selecting the table 'refSeqAli' instead of 'refGene'. The corresponding sequence files are on the downloads server under "Full data set". I hope this is helpful. If you have further questions, please feel free to contact us again at [email protected]. -- Brooke Rhead UCSC Genome Bioinformatics Group On 12/21/10 23:54, dechao bu wrote: > Dear Sir/Madam, > Where can I get the alignment result of mouse and human's > refseq-mRNA. > Thanks! > Best regards. > Dechao Bu > From China > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
