Hi, The Table Browser will allow you to download the UTR sequences. To use it, click "Tables" at the top of the page (which will take you to http://genome.ucsc.edu/cgi-bin/hgTables), and select your species and assembly of interest. Then select:
track: (pick a gene track) table: (use the first table in the list) region: genome output format: sequence output file: (enter a filename for downloading) and hit "get output". On the next page, select "genomic" and hit "submit". You will be able to select the 5' and 3' UTR Exons, and select some formatting options. Hit "get sequence" for your results. If you have further questions, please feel free to contact us again at [email protected]. -- Brooke Rhead UCSC Genome Bioinformatics Group On 12/21/10 23:51, Veeraragavan Rajendiran wrote: > Hi, > How can I get UTR sequences for my species of interest. Show me the ways to download whole set of sequences. > Thanks > > > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
