Hi Hiram, I am sorry for not being clear about my questions. The refFlat format is what called gene prediction format:
http://genome.ucsc.edu/goldenPath/gbdDescriptionsOld.html#RefFlat http://genome.ucsc.edu/FAQ/FAQformat.html#format9 Thanks, D. On 12/27/10 12:09 PM, Hiram Clawson wrote: > Good Morning Duke: > > Can you describe refFlat format ? I'm not familiar with that. > > The MySQL text dump: > ftp://hgdownload.cse.ucsc.edu/goldenPath/hg19/database/all_mrna.txt.gz > > is PSL format which is what "All fields" is from the table browser. > > --Hiram > > ----- Original Message ----- > From: "Duke"<[email protected]> > To: [email protected] > Sent: Monday, December 27, 2010 7:56:00 AM > Subject: [Genome] mRNA in genePred (refFlat) format > > Hi all, > > Anybody knows how I can download mouse mRNA track in refFlat format? The > Table Browser can give me BED, GTF or All fields (which I dont really > know what type of format it is), but not refFlat format. > > Thanks in advance, > > D. > _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
