Dear list, May I ask for some help in viewing short reads alignment to refSeq sequences instead of genomic sequences on UCSC. I have rna-seq reads aligned to refseq sequences from UCSC. In order to view the alignments on UCSC, I have to convert the refseq positions in my SAM/BAM files into genomic coordinates. Is there any way for me to reach this objective? I had a look at the 'refSeqAli.txt' table from UCSC, but haven't got a clue yet. I appreciate for any of your input!
Kind regards, Yuan _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
