Dear all, there is a public available data set with clusters of genome-mapped reads looking like this:
Cluster: slc1001 5.00 + chr1 89073413 89073444 32 mRNA 1.00 5.00 5 Cluster: slc1001 5.00 + chr7 107347391 107347410 20 mRNA 1.00 5.00 5 Cluster: slc100 5.00 + chr16 8785682 8785709 28 mRNA 1.00 5.00 5 Cluster: slc1007 5.00 - chr15 32421230 32421272 43 mRNA 1.00 5.00 5 Cluster: slc1010 5.00 - chr15 33058221 33058246 26 mRNA 1.00 5.00 5 Cluster: slc1011 5.00 + chr8 107833701 107833732 32 mRNA 1.00 5.00 5 Cluster: slc1012 5.00 - chr16 20716458 20716489 32 mRNA 1.00 5.00 5 Cluster: slc1014 5.00 + chr1 89953251 89953296 46 mRNA 1.00 5.00 5 which is supposed to be added as a local track in our local UCSC Genome Browser mirror. I already added a couple of 'easy' BED files as local tracks, but I have no idea in which file format such a clustering has to be stored (and how), whether this is suppor- ted by the corresponding track.ra file or even not possible. I have been told that the UCSC Genome Browser supports a kind of clustering. Do I have to transform these data into a BED format or may I ask you to give me any other hint , please? Thanks a lot in advance. Cheers, Gerd -- -- -------- Diplom-Informatiker Gerd Anders Berlin Institute for Medical Systems Biology (BIMSB) at the Max-Delbrueck-Center (MDC) for Molecular Medicine Robert-Roessle-Str. 10, 13125 Berlin, Germany _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
