Dear Colleagues I just downloaded the flyBaseGene table in gtf format and found 79 features where the strand equals ".". The gene names are CG32491-R? where ? is T through Z. The original table appears to have the same field:
#filter: flyBaseGene.name = 'CG32491-RV' #bin name chrom strand txStart txEnd cdsStart cdsEnd exonCount exonStarts exonEnds 716 CG32491-RV chr3R . 17194101 17203121 17194594 17202748 5 17194101,17200781,17202323,17202540,17203009, 17194784,17201634,17202463,17202798,17203121, The browser shows the features on the negative strand. Should the strand field be '-'? Thanks Mike Michael Muratet, Ph.D. Senior Scientist HudsonAlpha Institute for Biotechnology [email protected] (256) 327-0473 (p) (256) 327-0966 (f) Room 4005 601 Genome Way Huntsville, Alabama 35806 _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
