Hi Young, You may be interested in our new "Personal Genome SNP format" custom track type: http://genome.ucsc.edu/FAQ/FAQformat.html#format10 It computes amino acid changes on the fly when you view items in the Genome Browser.
However, there's not a way to get this information out of the Genome Browser in batch. Here's a previously-answered mailing list question on computing amino acid changes yourself: https://lists.soe.ucsc.edu/pipermail/genome/2009-July/019496.html I hope this is helpful. If you have further questions, please feel free to contact us again at [email protected]. -- Brooke Rhead UCSC Genome Bioinformatics Group On 01/03/11 14:54, Yang Xu wrote: > Hello, > > We identified SNPs on rat genome. Some of them are in coding region. Is > there efficient way that we could find the correspondent protein mutation > from the SNPs. > > For example, a SNP in Chr13: 45,220,701. How could I find out the position > and amino acid change to that SNP? We have thousands of such kind of data. > So we need to know the how to do that in batch. > > Thank you very much. > > Young > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
