Hi Margaret, Some of our tracks, such as our EST and mRNA tracks, as well as our blat alignments use the coloring described here (which includes a green line for ployA tails): http://genome.ucsc.edu/goldenPath/help/hgIndelDisplay.html
If you are wondering about incorporating this type of coloring in your own custom tracks, you can use the bam format. For more information on the BAM format custom track please see this page: http://genome.ucsc.edu/goldenPath/help/bam.html I hope this information is helpful. Please don't hesitate to contact the mail list again if you have any further questions. Katrina Learned UCSC Genome Bioinformatics Group Margaret Kovach wrote, On 01/07/11 09:37: > Hi, > > Is there a way/annotation to highlight polyadenylation and alternative > polyadenylation signals? > > Margaret Kovach, PhD > UC Foundation Associate Professor > University of Tennessee at Chattanooga > Department of Biological and Environmental Sciences > 213 Holt Hall-Dept. 2653 > Chattanooga, TN 37402 > T: (423) 425-4397 > F: (423) 425-2285 > [email protected] > > > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome > _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
