Hi,
The outputs from the refGene table in the table browser are causing me some
confusion. I am using the table browser with the Feb. 2009 hg19 assembly, in
the refGene table in the hg19 database. What is confusing me is that the
sequence given by the sequence output option sometimes differs drastically
from the human sequence in the alignment given by the CDS fasta alignment
output option.
Example: Using the accession NM_000442 as a pasted identifier, the human
sequence in the in the CDS fasta alignment output is only 18 characters
long, whereas the sequence given by the sequence out option is 739
characters long.
Thanks,
~Max
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