> >Hi, > > >I was wondering in particular how the lengths of untranscribed regions in the >UCSC genome browser are defined. In particular with respect to recent > developments in the determination of 3'ends in several genomes such as >C.elegans and Drosophila, I was wondering how the annotations of untranslated >regions in UCSC are made. > > > I was in particular wondering about the human knownGenes and in specific how >the utrs in the knownGene.txt are defined. As far as I read those are either >taken directly from refseq or, if there were not present in refseq the protein >coding sequence was calculated using txCdsPredict. So am I correct about that >the length of the transcribed regions is not calculated by UCSC but comes >straight from either refseq or genebank? >Thanks again, >Stefanie
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