Hi Joses, If you are using the Txn Factor ChIP (aka ENCODE Transcription Factor ChIP-seq) track, there isn't currently a way to display the data for just one transcritption factor at a time. However, you can configure the ENCODE TFBS tracks (the data from which were used to create the Txn Factor ChIP track) on hg18 to only show the data for a single factor. One way to do this is to make these configuration changes from the description page of each track (click on the gray button on the left-hand side of the track in the browser image or scroll down under the browser image, find the track and click on the title).
Probably the easiest way to find and turn on all the data for a single transcription factor across multiple tracks is to use the Tracks Search feature. Click on the "track search" button from the gateway or main browser page and click on the "Advanced" tab. In the "ENCODE terms" section, there are some drop downs menus that can help you find tracks with particular attributes. In the first drop-down, select "Antibody or target protein" and in the adjacent drop-down, select your factor of interest; click "search." This will pull up all the subtracks with data for your factor. You can further your results further using the other fields and drop-downs. To turn on the tracks you'd like to see, you can click the box next to the track and set them to the visibility you prefer. Then click "View in Browser" to see the data in the browser. For more information on the track search feature, please see http://genome.ucsc.edu/goldenPath/help/trackSearch.html. I hope this information is helpful. Please don't hesitate to contact the mail list again if you have any further questions. Katrina Learned UCSC Genome Bioinformatics Group Joses Ho wrote, On 01/26/11 06:29: > Hi, > > I want the Genome Browser to display the binding sites of just ONE > transcription factor (say, NFKB) instead of the entire repertoire of binding > sites. How can I do this? > > Best, > Joses > > > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome > _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
