Dear Sujit, The best way to do this is using our table browser which can be accessed from the home page by clicking on the "Tables" link from the blue navigation bar.
After selecting your assembly of interest select: group: Genes and Gene Prediction Tracks track: RefSeq Genes table: refGene region: genome identifiers (names/accessions): After clicking on "Paste List" put in "GFAP" and click on "Submit" output format: sequence output file: enter a filename here to download the results to your computer file type returned: choose "gzip compressed" Then click on "get output". This will take you to a menu where you can select "genomic" and this will take you to a menu where you can specify that you want promoter/upstream regions. Please feel free to contact the mailing list if you have further questions. Vanessa Kirkup Swing UCSC Genome Bioinformatics Group ----- Original Message ----- From: "sujit kashyap" <[email protected]> To: [email protected], [email protected] Sent: Tuesday, January 25, 2011 2:34:03 AM Subject: [Genome] GFAP promoter Hi, i was looking for the promoter of GFAP and its gene is located on the negative strand.I found the sequence from the galaxy which is attached with the mail.This sequence is located on the positive strand ,100mb away from the first exon of GFAP.I was using hg 19.Please solve this puzzle. I wish to take the sequence for cloning the promoter of GFAP,so please tell me the sequence co-ordinate or the location i should take. Regards Sujit Kashyap Institute of genomics and integrative biology Lab no:311(proteomics lab) Mall road,Delhi _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
