Hi Daniel, You could calculate the dn/ds ratios yourself using our CDS FASTA alignments for both the amino acids and nucleotides for all FlyBase genes (http://hgdownload.cse.ucsc.edu/goldenPath/dm3/multiz15way/alignments/). It is possible that Ensembl may also have a way to calculate this: https://lists.soe.ucsc.edu/pipermail/genome/2004-January/003853.html. If you have any questions about their website, please contact them at http://www.ensembl.org/Help/Contact.
I hope this information is helpful. Please feel free to contact the mail list again if you require further assistance. Best, Mary ------------------ Mary Goldman UCSC Bioinformatics Group On 2/1/11 1:26 PM, Daniel Dvorkin wrote: > I'd like to get a genome-wide data set containing dn/ds ratios for D. > melanogaster as compared to genes in other Drosophila species, > comparable to the PhastCons scores and HCEs available in the > "Conservation" and "Most Conserved" tracks in the default view. Does > anyone know if this information can either be directly downloaded or > easily calculated from the available Genome Browser information, or > alternately, if there are any other databases that offer this > information? Thanks! > > Daniel Dvorkin > Computational Bioscience Program > University of Colorado Denver > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
