Dear Sonia, The fastest way to get the information that you are interested in is to use our table browser. From the home page click on the "Tables" link in the blue navigation bar.
Set the following: clade: Mammal genome: Human assembly: hg19 (the second time around set this to hg18) group: mRNA EST Tracks track: Human mRNAs table: all_mrna region: position (click on "define regions", paste in your gene coordinates following the instructions and click "submit") output format: selected fields from primary and related tables output file: file name to save to your computer (leave blank if you want it to output in the browser) click "get output" select: qName Query sequence name qSize Query sequence size and other fields that you would like to have in the output click "get output" Feel free to contact the mailing list if you have further questions. Vanessa Kirkup Swing UCSC Genome Bioinformatics Group ----- Original Message ----- From: "Sonia Mayo de Andrés" <[email protected]> To: [email protected] Sent: Thursday, February 3, 2011 6:50:15 AM Subject: [Genome] QUESTION ABOUT HOW TO GET INFORMATION FROM UCSC To who it may concern, I am interested to get the mRNA size from a list of genes, the total, in a fast and easy way. I have the position of the genes in Hg18 and Hg19, but I haven’t find how to do it with the UCSC. Can you help me with it? Sonia Mayo de Andrés Unidad de Genética y Diagnóstico Prenatal Hospital Politécnico y Universitario la Fe Valencia. Spain _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
