Hi, I have a list of (36692) NCBI refSeq id in the following format. (Mouse, downloaded on May 2009 ) ***** gi|10048421|ref|NM_020488.1| gi|10048425|ref|NM_020501.1| **** Is there any way to get the chromosome start, end position of these geneID? ( chr6 131636578 131637481 gi|10048425|ref|NM_020501.1|)
I tried to intersect with the "NM_" id with UCSC "http://hgdownload.cse.ucsc.edu/goldenPath/mm9/database/refGene.txt.gz"; ******** gi|10048425|ref|NM_020501.1| Tas2r105 NM_020501 chr6 - 131636578 131637481 ******** But this "refGene.txt" contains only 28108 id's.. And I tried to find the gene with Entrez batch finder .. ******* Id=XM_915912: This record was removed as a result of standard genome annotation processing. See the genome build documentation at http://www.ncbi.nlm.nih.gov/genome/guide/build.html for further information, or contact [email protected]. Id=XM_912174: This record was replaced or removed. ........ ....... Received lines: 36692 Rejected lines: 17 Removed duplicates: 0 Passed to Entrez: 36675 ********* It will be a great help that if you can help me to get the chromosome start position of these genes or corresponding ENSEMBL gene ID. Thanks, Shibu _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
