Hi Kavita, By palindrome sequences, do you mean reverse tandem duplications? The self-chains will turn up some of these, but since mutations happen over time, it is very uncommon for the duplicated sequence to be exactly the same in both copies. So, various heuristics have to be applied based on what exactly is being looked for. To find the self-chain for an assembly, on the main browser page, scroll down to the Variation section and change the Self Chain from hide to one of the other views.
Please don't hesitate to contact the mail list again if you have any further questions. Katrina Learned UCSC Genome Bioinformatics Group [email protected] wrote, On 02/04/11 10:13: > What is the quickest way of finding palindrome sequences in the queried > genome region using the ucsc browser? > Thx > Kavita S Reddy PhD > Co-Director Kaiser Regional Cytogenetics Laboratory > 818-502-5112 > [email protected] > > NOTICE TO RECIPIENT: If you are not the intended recipient of this > e-mail, you are prohibited from sharing, copying, or otherwise using or > disclosing its contents. If you have received this e-mail in error, > please notify the sender immediately by reply e-mail and permanently > delete this e-mail and any attachments without reading, forwarding or > saving them. Thank you. > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome > _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
