Good Morning John: To view the opsin gene locations in the genome browser, open the genome browser page to view the Human sequence version Feb. 2009 (GRCh37/hg19)
http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg19 In the position/search entry box, enter: opsin and press the "jump" button. Since there are a number of opsin genes, you will see a list of them presented, select the one you want to view. To turn on the Neandertal reads/contigs and other information from the Neandertal project, scroll the page down to the section of control buttons labeled: Neandertal Assembly and Analysis The "Neandertal Seq" control button is the sequence reads, select visibility "pack" to turn on that track. You can adjust the behavior of the tracks by clicking on the buttons to the left of the graphic image display. You may also be interested in the opsin gene analysis project by Tom Pringle: http://genomewiki.ucsc.edu/index.php/Opsin_evolution:_update_blog Hopefully this information was helpful and answers your question. If you have further questions or require clarification feel free to contact the mailing list at genome at soe.ucsc.edu. --Hiram John Taylor wrote: > Dear UCSC, > > I'd like to see the neandertal reads/contigs that map to human opsin > genes. Can you help? > > Thanks, > > John Taylor > University of Victoria _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
