Hi, Please let me know the following:
1. What is the difference between repeat masker "Full" and "Dense" options? 2. When I use repeat masker in the Get DNA tool, is it set to "Full" or Dense"? 3. Are the sequence coordinates on UCSC hg19 version identical to NCBI build 37.2 (current)? 4. Are the sequence coordinates on UCSC hg18 version identical to NCBI build 36 (previous build)? In other words, are the coordinates interchangeable and identical coordinates will pull out identical sequence from both? 5. Are BAC/PAC and Fosmid clones tracked on the genome sequence and how do I view it? 6. Is there a primer design program available on UCSC not just blast, or in silico PCR? Thanks Vishnu Mishra Senior Scientist, Diagnostic Assay Development Illumina, Inc. 9885 Towne Centre Drive San Diego, CA 92121 Tel: 858-246-8813 E-mail: [email protected]<mailto:[email protected]> _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
