Hi Anna, Thank you for your question. There is a way to retrieve all RIKEN Clone IDs and their genomic positions using the Table Browser. Please see this previously answered mailing list question for instructions on how to do this: https://lists.soe.ucsc.edu/pipermail/genome/2006-September/011595.html
Once you have a list of all RIKEN Clone IDs, you may then write a script to parse out the IDs of interest. I hope this helps. Please contact us again at [email protected] if you have any further questions. Regards, Luvina --- Luvina Guruvadoo UCSC Genome Bioinformatics Group Anna Elefsinioti wrote: > Hi > I have a set of RIKEN clone ids from the FANTOM3 project and I would > like to map each one of them onto the corresponding genomic positions of > the mouse genome. When I enter a RIKEN ID as a query in the Genome > browser it is recognized and get the results that I want. But how can I > extract this information in a systematic way (eg from a script). Is > there any file in the ftp site that maps RIKEN ids with genomic positions? > thanks > Antigoni Elefsinioti > postdoc, MDC-Berlin > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome > _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
