Hi Kemal, Genes in that format are UCSC format genes. So in the table browser, choose your assembly and set...
group: Genes and Gene Prediction tracks track: UCSC Genes table: knownGene <=== region: genome You can paste your list of names by clicking "paste list" next to identifiers. Then... output format: selected fields from primary and related tables Click get output. Then select...(check boxes) name, txStart, txEnd And click 'get output' again. You'll have a list of the info you need. - Greg Roe UCSC Genome Browser On 2/13/11 1:37 PM, Kemal Pakatci wrote: > Hi, > I want to find positions corresponding to transcript ids. I couldn't find > the table for that. > The transcript ids I have of the form: *uc007afh.1 *which is on the 8 the > chromosome > > Does anybody know the ucsc browser table which includes this kind of > transcript id and position information? > > thanks > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
