Hello Hiram It would still be very useful if this tool was available through genome broser for the ease of use. Also we could not get the refseq name out with mySQL just the nm_# but I really need to get out the name of the gene
Thanks Valeria -----Original Message----- From: Hiram Clawson [mailto:[email protected]] Sent: Monday, January 24, 2011 10:03 AM To: Vasta, Valeria Cc: [email protected] Subject: Re: [Genome] POISTION TO GENE NAME Please note, you can perform this function directly with the MySQL tables: http://genomewiki.ucsc.edu/index.php/Finding_nearby_genes You can change the parameters in those SQL commands to extract gene names in a region instead of gene names near a region. --Hiram ----- Original Message ----- From: "Valeria Vasta" <[email protected]> To: "Mary Goldman" <[email protected]> Cc: [email protected] Sent: Saturday, January 22, 2011 11:42:53 AM Subject: Re: [Genome] POISTION TO GENE NAME Hello I was wondering if this feature has become available Thanks Valeria Hi Valeria, We appreciate your suggestion and will pass this request on to our developers. Best, Mary ------------------ Mary Goldman UCSC Bioinformatics Group On 11/16/10 1:10 PM, Vasta, Valeria wrote: > Hello > > I wonder if you could consider adding a coordinate to gene name > feature.This is highly desirable for instance in the context of exon > capture and sequencing where you may have to figure out what gene it is > a certain region with poor coverage without bioinfo support > > Thanks > > Valeria CONFIDENTIALITY NOTICE: This e-mail message, including any attachments, is for the sole use of the intended recipient(s) and may contain confidential and privileged information protected by law. Any unauthorized review, use, disclosure or distribution is prohibited. If you are not the intended recipient, please contact the sender by reply e-mail and destroy all copies of the original message. _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
