Hi Maayan, This information is not available on the Table Browser. However, you can download un-aligned EST sequences from the Sequence and Annotation Downloads page. From the main page, click on "Downloads" (located on the left-side navigation menu). On the following page, click on "Human", then "Full data set". This should direct you to the following page: http://hgdownload.cse.ucsc.edu/goldenPath/hg19/bigZips/. Scroll down and you will find "est.fa.gz", which contains all Human EST sequences in GenBank.
I hope this helps. Please contact us again at [email protected] if you have any further questions. Best, Luvina --- Luvina Guruvadoo UCSC Genome Bioinformatics Group maayan kreitzman wrote: > Hello, > I'm having trouble downloading EST sequences that have not had their > poly-A's chopped off. > I'm looking for alternative poly-a signals in a long list of genes of > interest, and I'd like to get a table or fasta with all the relevant ESTs. > But, when I go to the table browser, to mRNA and EST tracks-> Human mRNAs -> > Human ESTs and choose 'sequence' as the output format, I get the aligned EST > sequence, not the full one. > In contrast, if I simply cick on an EST in the Genome Browser I get to its > information page and I can click on 'EST sequence' which gives me the whole > sequence (no just the aligned sequence). > Is this information available in the table browser? > Your advice would be much appreciated. > thanks > maayan > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome > _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
