Hello,
I'm seeing one particular block of missing data from the 11 non-melanogaster species in the insect 15way multiple alignment. The D. melanogaster coordinate I enter on the browser is "chr3R:18,118,601-18,118,671" and I get the attached image. I should point out the block spanning from 18,118,608 - 18,118,647 is missing in all the other 11 species. This interval spans a popular microRNA which is highly conserved. Along with other evidence, I suspect this to be an error and not genuine INDEL in the alignment. Does anyone know what this is attributed to and how/if we can fix this in the multiple alignment? Thanks for your generous attention. Regards, Jaaved
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