Dear Rory, We've been able to reproduce your bug and have a put in a request for one of our engineers to look into this matter. Thank you for reporting this issue. If you have further questions, please don't hesitate to contact the mailing list.
Vanessa Kirkup Swing UCSC Genome Browser ----- Original Message ----- From: "Rory Kirchner" <[email protected]> To: [email protected] Sent: Thursday, February 24, 2011 11:07:26 AM Subject: [Genome] rat refgene table error When trying to download the refgene table from the refseq track in the rat, it outputs a file with a tail like this: chr10 rn4_refGene exon 4322648 4322711 0.000000 + . gene_id "NM_001008876"; transcript_id "NM_001008876"; chr10 rn4_refGene CDS 4325466 4325959 0.000000 + 2 gene_id "NM_001008876"; transcript_id "NM_001008876"; chr10 rn4_refGene exon 4325466 4325959 0.000000 + . gene_id "NM_001008876"; transcript_id "NM_001008876"; chr10 rn4_refGene CDS 4326108 4326278 0.000000 + 0 gene_id "NM_001008876"; transcript_id "NM_001008876"; chr10 rn4_refGene stop_codon 4326279 4326281 0.000000 + . gene_id "NM_001008876"; transcript_id "NM_001008876"; chr10 rn4_refGene exon 4326108 4326284 0.000000 + . gene_id "NM_001008876"; transcript_id "NM_001008876"; chr10 rn4_refGene start_codon 4293086 4293088 0.000000 + . gene_id "NM_001008876"; transcript_id "NM_001008876_dup1"; --------------------------------------------------------------------------- offsetToGenomic: need previous exon, but given index of 0 --------------------------------------------------------------------------- this has happened each time i have tried to download the table. any ideas about what could be causing that? -rory _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
