Good morning, I wanted to download the RPKM-files from the RNA-Seq experiment in the cell-line GM12878 (ENCODE). Surprisingly I found 3 files that differ only in view=data5, data6 or data7. What is this supposed to mean? and how can I treat them? Are they supposed to be combined? But why are they in different files then? Below you see the links..
Thanks a lot in advance and have a nice day! Sonja http://hgdownload.cse.ucsc.edu/goldenPath/hg18/encodeDCC/wgEncodeCaltechRnaSeq/ 2009-12-06 wgEncodeCaltechRnaSeqRawData5Rep1Gm12878CellLongpolyaErng32x75.rpkm.gz<http://hgdownload.cse.ucsc.edu/goldenPath/hg18/encodeDCC/wgEncodeCaltechRnaSeq/wgEncodeCaltechRnaSeqRawData5Rep1Gm12878CellLongpolyaErng32x75.rpkm.gz> 538K 2009-03-06 dataType=RnaSeq; cell=GM12878; rnaExtract=longPolyA; localization=cell; replicate=1; subId=266; dataVersion=ENCODE Feb 2009 Freeze; grant=Myers; lab=Caltech; labVersion=erange3.0.1; mapAlgorithm=erng3; view=RawData5; type=rpkm; insertLength=200; readType=2x75 2009-12-06 wgEncodeCaltechRnaSeqRawData6Rep1Gm12878CellLongpolyaErng32x75.rpkm.gz<http://hgdownload.cse.ucsc.edu/goldenPath/hg18/encodeDCC/wgEncodeCaltechRnaSeq/wgEncodeCaltechRnaSeqRawData6Rep1Gm12878CellLongpolyaErng32x75.rpkm.gz> 3.9M 2009-03-06 dataType=RnaSeq; cell=GM12878; rnaExtract=longPolyA; localization=cell; replicate=1; subId=266; dataVersion=ENCODE Feb 2009 Freeze; grant=Myers; lab=Caltech; labVersion=erange3.0.1; mapAlgorithm=erng3; view=RawData6; type=rpkm; insertLength=200; readType=2x75 2009-12-06 wgEncodeCaltechRnaSeqRawData7Rep1Gm12878CellLongpolyaErng32x75.rpkm.gz<http://hgdownload.cse.ucsc.edu/goldenPath/hg18/encodeDCC/wgEncodeCaltechRnaSeq/wgEncodeCaltechRnaSeqRawData7Rep1Gm12878CellLongpolyaErng32x75.rpkm.gz> 219K 2009-03-06 dataType=RnaSeq; cell=GM12878; rnaExtract=longPolyA; localization=cell; replicate=1; subId=266; dataVersion=ENCODE Feb 2009 Freeze; grant=Myers; lab=Caltech; labVersion=erange3.0.1; mapAlgorithm=erng3; view=RawData7; type=rpkm; insertLength=200; readType=2x75 _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
