I am trying to get sequence information from the genome browser. I want human DNA sequence with the coordinates according to build 37 (the most recent build). I enter a series of regions and a text file is downloaded with sequence information. However, sometimes that information is contradictory. For example, here are some sequences from chromosome 1 that are supposed to be starting with the same nucleotide (67278574), but they clearly aren't:
>hg19_knownGene_uc009waw.2 range=chr1:67278574-67340620 5'pad=0 3'pad=0 >strand=- repeatMasking=none ATTTGCAAGTTATA >hg19_knownGene_uc009wax.2 range=chr1:67278574-67356505 5'pad=0 3'pad=0 >strand=- repeatMasking=none TTCCTCTTCTTTTCCTCTTC I noticed a difference of "waw" versus "wax" following the "uc009" and searched for information on that, but couldn't find it. Can someone point out what I'm doing wrong? Thanks very much. Eric _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
